Geniml

Use Geniml for machine learning and statistical workflows over genomic interval sets. Treat coordinates, assemblies, token vocabularies, model artifacts, and sample grouping as explicit contracts. The bundled scripts validate or plan; they do not import Geniml, contact services, deserialize models, or execute training.

Bash is declared only for explicit, user-approved uv, Python, Geniml, Gtars, Git, and native CLI commands shown in this guide; bundled Python helpers do not spawn subprocesses. Example paths under data/, refs/, work/, and models/ are user-provided project placeholders, not missing bundled files.

Verified release snapshot

• Latest stable PyPI release on 2026-07-23: geniml==0.8.4 (2026-01-14).
• PyPI does not declare Requires-Python; its classifiers list Python 3.10-3.14. Prefer Python 3.11 or 3.12 where all native/ML wheels resolve.
• geniml==0.8.4 accepts gtars>=0.2.5; the verified base smoke used current gtars==0.9.2 (2026-06-17, Python >=3.10).
• Extras are ml and test. The base install omits Torch, Gensim, Scanpy, Hugging Face Hub, pyBigWig, and HMM dependencies.
• Upstream documentation contains stale examples. Rele…